Publications

365 entries « 1 of 8 »

2021

McGee, J. P; Melani, R. D; Yip, P. F; Senko, M. W; Compton, P. D; Kafader, J. O; Kelleher, N. L

Isotopic Resolution of Protein Complexes up to 466 kDa Using Individual Ion Mass Spectrometry Journal Article

In: Anal Chem., 93 (5), pp. 2723-2727, 2021.

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Liu, Y; Davis, R. G; Thomas, P. M; Kelleher, N. L; Jewett, M. C

In vitro-Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins Journal Article

In: Biochemistry., 60 (3), pp. 161-169, 2021.

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Yusufova, N; Kloetgen, A; Teater, M; Osunsade, A; Camarillo, J. M; Chin, C. R; Doane, A. S; Venters, B. J; Portillo-Ledesma, S; Conway, J; Phillip, J. M; Elemento, O; Scott, D. W; Béguelin, W; Licht, J. D; Kelleher, N. L; Staudt, L. M; Skoultchi, A. I; Keogh, M. C; Apostolou, E; Mason, C. E; Imielinski, M; Schlick, T; David, Y; Tsirigos, A; Allis, C. D; Soshnev, A. A; Cesarman, E; Melnick, A. M

Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture Journal Article

In: Nature., 589 (7841), pp. 299-305, 2021.

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2020

Hoofnagle, A. N; Cobbaert, C. M; Delatour, V; Kelleher, N. L; Lowenthal, M. S; Shuford, C. M

Should LC-MS/MS Be the Reference Measurement Procedure to Determine Protein Concentrations in Human Samples? Journal Article

In: Clin Chem., 2020.

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Hamm, P. S; Dunlap, C. A; Mullowney, M. W; Caimi, N. A; Kelleher, N. L; Thomson, R. J; Porras-Alfaro, A; Northup, D. E

Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species Journal Article

In: Antonie Van Leeuwenhoek., 113 (12), pp. 2213-2221, 2020.

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An, S; Camarillo, J. M; Huang, T. Y; Li, D; Morris, J. A; Zoltek, M. A; Qi, J; Behbahani, M; Kambhampati, M; Kelleher, N. L; Nazarian, J; Thomas, P. M; Saratsis, A. M

Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma Journal Article

In: J Exp Clin Cancer Res., 39 (1), pp. 261, 2020.

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Tryon, J. H; Rote, J. C; Chen, L; Robey, M. T; Vega, M. M; Phua, W. C; Metcalf, W. W; Ju, K. S; Kelleher, N. L; Thomson, R. J

Genome Mining and Metabolomics Uncover a Rare d-Capreomycidine Containing Natural Product and Its Biosynthetic Gene Cluster Journal Article

In: ACS Chem Biol. , 15 (11), pp. 3013-3020, 2020.

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Caesar, L. K; Kelleher, N. L; Keller, N. P.

In the fungus where it happens: History and future propelling Aspergillus nidulans as the archetype of natural products research Journal Article

In: Fungal Genet Biol., 144 , 2020.

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Abshiru, N. A; Sikora, J. W; Camarillo, J. M; Morris, J. A; Compton, P. D; Lee, T; Neelamraju, Y; Haddox, S; Sheridan, C; Carroll, M; Cripe, L. D; Tallman, M. S; Paietta, E. M; Melnick, A. M; Thomas, P. M; Garrett-Bakelman, F. E; Kelleher, N. L.

Targeted detection and quantitation of histone modifications from 1,000 cells Journal Article

In: PLoS One., 15 (10), 2020.

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Deighan, W. I; Winton, V. J; Melani, R. D; Anderson, L. C; McGee, J. P; Schachner, L. F; Barnidge, D; Murray, D; Alexander, H. D; Gibson, D. S; Deery, M. J; McNicholl, F. P; McLaughlin, J; Kelleher, N. L; Thomas, P. M

Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down de novo sequencing Journal Article

In: Clin Chem Lab Med., 2020.

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Srzentić, K; Fornelli, L; Tsybin, Y. O; Loo, J. A; Seckler, H; Agar, J. N; Anderson, L. C; Bai, D. L; Beck, A; Brodbelt, J. S; van der Burgt, Y. E. M; Chamot-Rooke, J; Chatterjee, S; Chen, Y; Clarke, D. J; Danis, P. O; Diedrich, J. K; D'Ippolito, R. A; Dupré, M; Gasilova, N; Ge, Y; Goo, Y. A; Goodlett, D. R; Greer, S; Haselmann, K. F; He, L; Hendrickson, C. L; Hinkle, J. D; Holt, M. V; Hughes, S; Hunt, D. F; Kelleher, N. L; Kozhinov, A. N; Lin, Z; Malosse, C; Marshall, A. G; Menin, L; Millikin, R. J; Nagornov, K. O; Nicolardi, S; Paša-Tolić, L; Pengelley, S; Quebbemann, N. R; Resemann, A; Sandoval, W; Sarin, R; Schmitt, N. D; Shabanowitz, J; Shaw, J. B; Shortreed, M. R; Smith, L. M; Sobott, F; Suckau, D; Toby, T; Weisbrod, C. R; Wildburger, N. C; Yates, J. R 3rd; Yoon, S. H; Young, N. L; Zhou, M

Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry. Journal Article

In: J Am Soc Mass Spectrom., 31 (9), pp. 1783-1802, 2020.

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Caesar, L. K; Robey, M. T; Swyer, M; Islam, M. N; Ye, R; Vagadia, P. P; Schiltz, G. E; Thomas, P. M; Wu, C. C; Kelleher, N. L; Keller, N. P; Bok, J. W

Heterologous Expression of the Unusual Terreazepine Biosynthetic Gene Cluster Reveals a Promising Approach for Identifying New Chemical Scaffolds. Journal Article

In: mBio., 11 (4), 2020.

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Ives, A. N; Su, T; Durbin, K. R; Early, B. P; Dos Santos Seckler, H; Fellers, R. T; LeDuc, R. D; Schachner, L. F; Patrie, S. M; Kelleher, N. L

Using 10,000 Fragment Ions to Inform Scoring in Native Top-down Proteomics. Journal Article

In: J Am Soc Mass Spectrom., 31 (7), pp. 1398-1409, 2020.

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Béguelin, W; Teater, M; Meydan, C; Hoehn, K. B; Phillip, J. M; Soshnev, A. A; Venturutti, L; Rivas, M. A; Calvo-Fernández, M. T; Gutierrez, J; Camarillo, J. M; Takata, K; Tarte, K; Kelleher, N. L; Steidl, C; Mason, C. E; Elemento, O; Allis, C. D; Kleinstein, S. H; Melnick, A. M

Mutant EZH2 Induces a Pre-malignant Lymphoma Niche by Reprogramming the Immune Response. Journal Article

In: Cancer Cell, 37 (5), pp. 655-673, 2020.

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Kafader, J. O; Melani, R. D; Durbin, K. R; Ikwuagwu, B; Early, B. P; Fellers, R. T; Beu, S. C; Zabrouskov, V; Makarov, A. A; Maze, J. T; Shinholt, D. L; Yip, P. F; Tullman-Ercek, D; Senko, M. W; Compton, P. D; Kelleher, N. L

Multiplexed mass spectrometry of individual ions improves measurement of proteoforms and their complexes. Journal Article

In: Nat Methods., 17 (4), pp. 391-394, 2020.

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Zhu, W; Doubleday, P. F; Catlin, D. S; Weerawarna, P. M; Butrin, A; Shen, S; Wawrzak, Z; Kelleher, N. L; Liu, D; Silverman, R. B

A Remarkable Difference That One Fluorine Atom Confers on the Mechanisms of Inactivation of Human Ornithine Aminotransferase by Two Cyclohexene Analogues of γ-Aminobutyric Acid. Journal Article

In: J Am Chem Soc., 142 (10), pp. 4892-4903, 2020.

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Kafader, J. O; Durbin, K. R; Melani, R. D; Des Soye, B. J; Schachner, L. F; Senko, M. W; Compton, P. D; Kelleher, N. L

Individual Ion Mass Spectrometry Enhances the Sensitivity and Sequence Coverage of Top-Down Mass Spectrometry. Journal Article

In: J Proteome Res., 19 (3), pp. 1346-1350, 2020.

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McGee, J. P; Melani, R. D; Goodwin, M; McAlister, G; Huguet, R; Senko, M. W; Compton, P. D; Kelleher, N. L

Voltage Rollercoaster Filtering of Low-Mass Contaminants During Native Protein Analysis. Journal Article

In: J Am Soc Mass Spectrom., 31 (3), pp. 763-767, 2020.

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Kosciuk, T; Price, I. R; Zhang, X; Zhu, C; Johnson, K. N; Zhang, S; Halaby, S. L; Komaniecki, G. P; Yang, M; DeHart, C. J; Thomas, P. M; Kelleher, N. L; Fromme, J. C; Lin, H

NMT1 and NMT2 are lysine myristoyltransferases regulating the ARF6 GTPase cycle. Journal Article

In: Nat Commun., 11 (1), pp. 1067, 2020.

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Shen, S; Doubleday, P. F; Weerawarna, P. M; Zhu, W; Kelleher, N. L; Silverman, R. B

Mechanism-Based Design of 3-Amino-4-Halocyclopentenecarboxylic Acids as Inactivators of GABA Aminotransferase Journal Article

In: ACS Med Chem Lett., 11 (10), pp. 1949-1955, 2020.

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Schneider, J. R; Shen, X; Orlandi, C; Nyanhete, T; Sawant, S; Carias, A. M; Smith, A. D 4th; Kelleher, N. L; Veazey, R. S; Lewis, G. K; Tomaras, G. D; Hope, T. J

A MUC16 IgG Binding Activity Selects for a Restricted Subset of IgG Enriched for Certain Simian Immunodeficiency Virus Epitope Specificities. Journal Article

In: J Virol., 94 (5), 2020.

Abstract | Links | BibTeX | Tags:

Fornelli, L; Srzentić, K; Toby, T. K; Doubleday, P. F; Huguet, R; Mullen, C; Melani, R. D; Dos Santos Seckler, H; DeHart, C. J; Weisbrod, C. R; Durbin, K. R; Greer, J. B; Early, B. P; Fellers, R. T; Zabrouskov, V; Thomas, P. M; Compton, P. D; Kelleher, N. L

Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics Journal Article

In: Mol Cell Proteomics., 19 (2), pp. 405-420, 2020.

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Kafader, J. O; Melani, R. D; Schachner, L. F; Ives, A. N; Patrie, S. M; Kelleher, N. L; Compton, P. D

Native vs Denatured: An in Depth Investigation of Charge State and Isotope Distributions Journal Article

In: J Am Soc Mass Spectrom., 31 (3), pp. 574-581, 2020.

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Navarro-Muñoz, J. C; Selem-Mojica, N; Mullowney, M. W; Kautsar, S. A; Tryon, J. H; Parkinson, E. I; De Los Santos, E. L. C; Yeong, M; Cruz-Morales, P; Abubucker, S; Roeters, A; Lokhorst, W; Fernandez-Guerra, A; Cappelini, L. T. D; Goering, A. W; Thomson, R. J; Metcalf, W. W; Kelleher, N. L; Barona-Gomez, F; Medema, M. H

A computational framework to explore large-scale biosynthetic diversity Journal Article

In: Nat Chem Biol., 16 (1), pp. 60-68, 2020.

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Park, H. M; Winton, V. J; Drader, J. J; Manalili Wheeler, S; Lazar, G. A; Kelleher, N. L; Liu, Y; Tran, J. C; Compton, P. D

Novel Interface for High-Throughput Analysis of Biotherapeutics by Electrospray Mass Spectrometry Journal Article

In: Anal Chem., 92 (2), pp. 2186-2193, 2020.

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Montaser, R; Kelleher, N. L

Discovery of the Biosynthetic Machinery for Stravidins, Biotin Antimetabolites Journal Article

In: ACS Chem Biol. , 2020.

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Winer, B; Edgel, K. A; Zou, X; Sellau, J; Hadiwidjojo, S; Garver, L. S; McDonough, C. E; Kelleher, N. L; Thomas, P. M; Villasante, E; Ploss, A; Gerbasi, V. R

Identification of Plasmodium falciparum proteoforms from liver stage models Journal Article

In: Malar J., 19 (1), pp. 10, 2020.

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Doubleday, P. F; Fornelli, L; Kelleher, N. L

Elucidating Proteoform Dynamics Underlying the Senescence Associated Secretory Phenotype Journal Article

In: J Proteome Res., 2020.

Abstract | Links | BibTeX | Tags:

Navarro-Muñoz, J. C; Selem-Mojica, N; Mullowney, M. W; Kautsar, S. A; Tryon, J. H; Parkinson, E. I; De Los Santos, E. L. C; Yeong, M; Cruz-Morales, P; Abubucker, S; Roeters, A; Lokhorst, W; Fernandez-Guerra, A; Cappelini, L. T. D; Goering, A. W; Thomson, R. J; Metcalf, W. W; Kelleher, N. L; Barona-Gomez, F; Medema, M. H.

A computational framework to explore large-scale biosynthetic diversity Journal Article

In: Nat Chem Biol., 16 (10), pp. 60-68, 2020.

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2019

Camarillo, J. M; Swaminathan, S; Abshiru, N. A; Sikora, J. W; Thomas, P. M; Kelleher, N. L

Coupling Fluorescence-Activated Cell Sorting and Targeted Analysis of Histone Modification Profiles in Primary Human Leukocytes Journal Article

In: J Am Soc Mass Spectrom., 30 (12), pp. 2526-2534, 2019.

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Melani, R. D; Srzentić, K; Gerbasi, V. R; McGee, J. P; Huguet, R; Fornelli, L; Kelleher, N. L

Direct measurement of light and heavy antibody chains using ion mobility and middle-down mass spectrometry Journal Article

In: MAbs., 11 (8), pp. 1351-1357, 2019.

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Des Soye, B. J; Gerbasi, V. R; Thomas, P. M; Kelleher, N. L; Jewett, M. C

A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli Journal Article

In: Cell Chem Biol., 26 (12), pp. 1743-1754, 2019.

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Huguet, R; Mullen, C; Srzentić, K; Greer, J. B; Fellers, R. T; Zabrouskov, V; Syka, J. E. P; Kelleher, N. L; Fornelli, L

Proton Transfer Charge Reduction Enables High-Throughput Top-Down Analysis of Large Proteoforms Journal Article

In: Anal Chem., 91 (24), pp. 15732-15739, 2019.

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Ling, T; Birger, Y; Stankiewicz, M J; Ben-Haim, N; Kalisky, T; Rein, A; Kugler, E; Chen, W; Fu, C; Zhang, K; Patel, H; Sikora, J W; Goo, Y A; Kelleher, N; Zou, L; Izraeli, S; Crispino, J D

Chromatin occupancy and epigenetic analysis reveal new insights into the function of the GATA1 N terminus in erythropoiesis Journal Article

In: Blood, 134 (19), pp. 1619 - 1631, 2019.

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Kafader, J. O; Beu, S. C; Early, B. P; Melani, R. D; Durbin, K. R; Zabrouskov, V; Makarov, A. A; Maze, J. T; Shinholt, D. L; Yip, P. F; Kelleher, N. L; Compton, P. D; Senko, M. W

STORI Plots Enable Accurate Tracking of Individual Ion Signals Journal Article

In: J Am Soc Mass Spectrom., 30 (11), pp. 2200-2203, 2019.

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Park, H. M; Satta, R; Davis, R. G; Goo, Y. A; LeDuc, R. D; Fellers, R. T; Greer, J. B; Romanova, E. V; Rubakhin, S. S; Tai, R; Thomas, P. M; Sweedler, J. V; Kelleher, N. L; Patrie, S. M; Lasek, A. W

Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol Journal Article

In: J Proteome Res., 18 (11), pp. 3999-4012, 2019.

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Schneider, J. R; Shen, X; Orlandi, C; Nyanhete, T; Sawant, S; Carias, A. M; Smith, A. D; Kelleher, N. L; Veazey, R. S; Lewis, G. K; Tomaras, G. D; Hope, T. J

A MUC16 IgG binding activity selects for a restricted subset of IgG enriched for certain SIV epitope specificities Journal Article

In: J Virol., 2019.

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Bennett, R. L; Bele, A; Small, E. C; Will, C. M; Nabet, B; Oyer, J. A; Huang, X; Ghosh, R. P; Grzybowski, A. T; Yu, T; Zhang, Q; Riva, A; Lele, T. P; Schatz, G. C; Kelleher, N. L; Ruthenburg, A. J; Liphardt, J; Licht, J. D

A Mutation in Histone H2B Represents a New Class of Oncogenic Driver Journal Article

In: Cancer Discov., 9 (10), pp. 1438-1451, 2019.

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Smith, L. M; Thomas, P. M; Shortreed, M. R; Schaffer, L. V; Fellers, R. T; LeDuc, R. D; Tucholski, T; Ge, Y; Agar, J. N; Anderson, L. C; Chamot-Rooke, J; Gault, J; Loo, J. A; Paša-Tolić, L; Robinson, C. V; Schlüter, H; Tsybin, Y. O; Vilaseca, M; Vizcaíno, J. A; Danis, P. O; Kelleher, N. L

A five-level classification system for proteoform identifications Journal Article

In: Nat Methods., 16 (10), pp. 939-940, 2019.

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Lue, J. K; Prabhu, S. A; Liu, Y; Gonzalez, Y; Verma, A; Mundi, P. S; Abshiru, N; Camarillo, J. M; Mehta, S; Chen, E. I; Qiao, C; Nandakumar, R; Cremers, S; Kelleher, N. L; Elemento, O; Amengual, J. E

Precision Targeting with EZH2 and HDAC Inhibitors in Epigenetically Dysregulated Lymphomas Journal Article

In: Clin Cancer Res, 25 (17), pp. 5271-5283, 2019.

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Huang, X; LeDuc, R. D; Fornelli, L; Schunter, A. J; Bennett, R. L; Kelleher, N. L; Licht, J. D

Defining the NSD2 interactome: PARP1 PARylation reduces NSD2 histone methyltransferase activity and impedes chromatin binding Journal Article

In: J Biol Chem., 294 (33), pp. 12459-12471, 2019.

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Schachner, L. F; Ives, A. N; McGee, J. P; Melani, R. D; Kafader, J. O; Compton, P. D; Patrie, S. M; Kelleher, N. L

Standard Proteoforms and Their Complexes for Native Mass Spectrometry Journal Article

In: Journal of the American Society for Mass Spectrometry, 30 (7), pp. 1190-1198, 2019.

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Donnelly, D. P; Rawlins, C. M; DeHart, C. J; Fornelli, L; Schachner, L. F; Lin, Z; Lippens, J. L; Aluri, K. C; Sarin, R; Chen, B; Lantz, C; Jung, W; Johnson, K. R; Koller, A; Wolff, J. J; Campuzano, I. D. G; Auclair, J. R; Ivanov, A. R; Whitelegge, J. P; Paša-Tolić, L; Chamot-Rooke, J; Danis, P. O; Smith, L. M; Tsybin, Y. O; Loo, J. A; Ge, Y; Kelleher, N. L; Agar, J. N

Best practices and benchmarks for intact protein analysis for top-down mass spectrometry Journal Article

In: Nat Methods., 16 (7), pp. 587-594, 2019.

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Moschitto, M. J; Doubleday, P. F; Catlin, D. S; Kelleher, N. L; Liu, D; Silverman, R. B

Mechanism of Inactivation of Ornithine Aminotransferase by (1S,3S)-3-Amino-4-(hexafluoropropan-2-ylidenyl)cyclopentane-1-carboxylic Acid Journal Article

In: J Am Chem Soc., 14 (27), pp. 10711-10721, 2019.

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Ro, S. Y; Schachner, L. F; Koo, C. W; Purohit, R; Remis, J. P; Kenney, G. E; Liauw, B. W; Thomas, P. M; Patrie, S. M; Kelleher, N. L; Rosenzweig, A. C

Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase Journal Article

In: Nat Commun., 10 (1), pp. 2675, 2019.

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Schaffer, L. V; Millikin, R. J; Miller, R. M; Anderson, L. C; Fellers, R. T; Ge, Y; Kelleher, N. L; LeDuc, R. D; Liu, X; Payne, S. H; Sun, L; Thomas, P. M; Tucholski, T; Wang, Z; Wu, S; Wu, Z; Yu, D; Shortreed, M. R; Smith, L. M

Identification and Quantification of Proteoforms by Mass Spectrometry Journal Article

In: Proteomics and Systems Biology, 19 (10), 2019.

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LeDuc, R. D; Fellers, R. T; Early, B. P; Greer, J. B; Shams, D. P; Thomas, P; Kelleher, N. L.

Accurate Estimation of Context-Dependent False Discovery Rates in Top-Down Proteomics Journal Article

In: Mol Cell Proteomics., 18 (4), pp. 796-805, 2019.

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Cline, E. N; Das, A; Bicca, M. A; Mohammad, S. N; Schachner, L. F; Kamel, J. M; DiNunno, N; Weng, A; Paschall, J. D; Bu, R. L; Khan, F. M; Rollins, M. G; Ives, A. N; Shekhawat, G; Nunes-Tavares, N; de Mello, F. G; Compton, P. D; Kelleher, N. L; Klein, W. L.

A novel crosslinking protocol stabilizes amyloid β oligomers capable of inducing Alzheimer's-associated pathologies Journal Article

In: J Neurochem., 148 (6), pp. 822-836, 2019.

Abstract | Links | BibTeX | Tags:

Kafader, J. O; Melani, R. D; Senko, M. W; Makarov, A. A; Kelleher, N. L; Compton, P. D.

Measurement of Individual Ions Sharply Increases the Resolution of Orbitrap Mass Spectra of Proteins Journal Article

In: Anal Chem., 91 (4), pp. 2776-2783, 2019.

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Swaroop, A.; Oyer, J. A; Will, C. M; Huang, X; Yu, W; Troche, C; Bulic, M; Durham, B. H; Wen, Q. J; Crispino, J. D; MacKerell, A. D. Jr; Bennett, R. L; Kelleher, N. L; Licht, J. D.

An activating mutation of the NSD2 histone methyltransferase drives oncogenic reprogramming in acute lymphocytic leukemia Journal Article

In: Oncogene., 38 (5), pp. 671-686, 2019.

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365 entries « 1 of 8 »